Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0603
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 114 4e-26
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 55 4e-08
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 55 4e-08
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 55 4e-08
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 55 4e-08
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 55 4e-08
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 55 4e-08
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 55 5e-08
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 50 1e-06
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 50 1e-06
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 47 9e-06
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 32 0.38
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 31 0.66
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 31 0.66
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 31 0.66
U43375-6|AAA83623.2| 515|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z46787-6|CAA86744.1| 392|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical ... 28 6.2
AF039051-3|AAB94261.2| 347|Caenorhabditis elegans Hypothetical ... 28 6.2
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 114 bits (275), Expect = 4e-26
Identities = 70/182 (38%), Positives = 91/182 (50%)
Frame = -2
Query: 555 ARALLKAVRGKKISGNLFSDEKIFPVEESYNKQNDKVXAHSSEEASNRIPACPTRSFSIL 376
A LL+ R LF+DEKIF +E+S+N QND+V A + + + P I+
Sbjct: 201 AMNLLRRFRNGAHRKVLFTDEKIFCIEQSFNTQNDRVYAKTQPNSRVQRTGYPK---GIM 257
Query: 375 AHGMAGSFLLGLNRGTFL*ERCKXECSCGXKYSPXEPCGTFSHTMFNNRHWVFQQDSAPA 196
AG G F+ + K + E + F W FQQD APA
Sbjct: 258 V--FAGITANGKTPLIFVPQGIKVNGNNYLDMLKTELM-PWVKKHFKKTKWTFQQDGAPA 314
Query: 195 HRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEKACSNPHPNLESLKTSL 16
H+ K+ Q W + DFI WP SSPDLNP+DY +W LE KACS PH N++SLK SL
Sbjct: 315 HKHKNVQAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAKACSKPHRNIDSLKDSL 374
Query: 15 IK 10
K
Sbjct: 375 KK 376
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 404 RVQRGHFPSSLMVWLGVSYWGLTEVHFCEKGVKXN 300
RVQR +P +MV+ G++ G T + F +G+K N
Sbjct: 246 RVQRTGYPKGIMVFAGITANGKTPLIFVPQGIKVN 280
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -2
Query: 231 RHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEK 64
R +VFQQD+ P H + + W R + + DWPS SPDLNP+++ +W+ LE +
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERR 221
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -2
Query: 231 RHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEK 64
R +VFQQD+ P H + + W R + + DWPS SPDLNP+++ +W+ LE +
Sbjct: 211 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERR 262
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -2
Query: 231 RHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEK 64
R +VFQQD+ P H + + W R + + DWPS SPDLNP+++ +W+ LE +
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERR 291
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -2
Query: 231 RHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEK 64
R +VFQQD+ P H + + W R + + DWPS SPDLNP+++ +W+ LE +
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERR 221
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -2
Query: 231 RHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEK 64
R +VFQQD+ P H + + W R + + DWPS SPDLNP+++ +W+ LE +
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERR 221
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -2
Query: 231 RHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEK 64
R +VFQQD+ P H + + W R + + DWPS SPDLNP+++ +W+ LE +
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERR 291
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -2
Query: 231 RHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEK 64
R +VFQQD+ P H + + W R + + DWPS SPDLNP+++ +W+ LE +
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEKLERR 291
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = -2
Query: 240 FNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEE-- 67
++ + + FQQD+A H + ST+D+ ++I+ + DWP+ SPDLNP++ +W L
Sbjct: 221 YSRKDFRFQQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIV 276
Query: 66 KACSNPHPNLESLKTSLI 13
A + +P + SLK ++
Sbjct: 277 YAQNKTYPTVASLKQGIL 294
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = -2
Query: 240 FNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEE-- 67
++ + + FQQD+A H + ST+D+ ++I+ + DWP+ SPDLNP++ +W L
Sbjct: 221 YSRKDFRFQQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIV 276
Query: 66 KACSNPHPNLESLKTSLI 13
A + +P + SLK ++
Sbjct: 277 YAQNKTYPTVASLKQGIL 294
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = -2
Query: 240 FNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEE-- 67
++ + + FQQD+A H + ST+D+ ++I+ + DWP+ SPDLNP++ +W L
Sbjct: 351 YSRKDFRFQQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIV 406
Query: 66 KACSNPHPNLESLKTSLI 13
A + +P + SLK ++
Sbjct: 407 YAQNKTYPTVASLKQGIL 424
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 47.2 bits (107), Expect = 9e-06
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = -2
Query: 222 VFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEE--KACSNP 49
+F QD+A H + ST+D+ ++I+ + DWP+ SPDLNP++ +W L A +
Sbjct: 39 IFCQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKT 94
Query: 48 HPNLESLKTSLI 13
+P + SLK ++
Sbjct: 95 YPTVASLKQGIL 106
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = -2
Query: 210 DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEKACSNPHPNLES 31
D+A H A T+ L I+ + H P SPDL P DY +++ L+ + ++
Sbjct: 214 DNARPHTALKTRQKLQTLGIEVLPH---PPYSPDLAPTDYHLFRSLQNHLAGQKFHDRKA 270
Query: 30 LKTSL 16
++T L
Sbjct: 271 VETWL 275
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 31.1 bits (67), Expect = 0.66
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = -2
Query: 219 FQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEKACSNPHPN 40
F D+A H AK T L + H P SPDL P DY ++ L + +
Sbjct: 239 FLHDNARPHVAKKTFQKLQDLGWTVLPH---PPYSPDLAPTDYHLFLSLSDYMRDKQFDD 295
Query: 39 LESLKTSL 16
E LKT L
Sbjct: 296 EEHLKTEL 303
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 31.1 bits (67), Expect = 0.66
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = -2
Query: 219 FQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEKACSNPHPN 40
F D+A H AK T L + H P SPDL P DY ++ L + +
Sbjct: 214 FLHDNARPHVAKKTFQKLQDLGWTVLPH---PPYSPDLAPTDYHLFLSLSDYMRDKQFDD 270
Query: 39 LESLKTSL 16
E LKT L
Sbjct: 271 EEHLKTEL 278
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 31.1 bits (67), Expect = 0.66
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = -2
Query: 219 FQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEKACSNPHPN 40
F D+A H AK T L + H P SPDL P DY ++ L + +
Sbjct: 239 FLHDNARPHVAKKTFQKLQDLGWTVLPH---PPYSPDLAPTDYHLFLSLSDYMRDKQFDD 295
Query: 39 LESLKTSL 16
E LKT L
Sbjct: 296 EEHLKTEL 303
>U43375-6|AAA83623.2| 515|Caenorhabditis elegans Hypothetical
protein K09C4.5 protein.
Length = 515
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 433 TVCVHLIILF-VVALFYGKNFFIRKKISRYFFSAYRFQ 543
T+ + +I +F +V F+G FFI S++FF AY ++
Sbjct: 406 TINLPIISIFPIVYSFFGPGFFIIHVFSQFFFGAYLYR 443
>Z46787-6|CAA86744.1| 392|Caenorhabditis elegans Hypothetical
protein C16C10.6 protein.
Length = 392
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -2
Query: 534 VRGKKISGNLFSDEKIFPVEESYNKQNDKVXAHSSEEA 421
+R ++ G+ F D+++F V +Y KQ ++V H +EA
Sbjct: 126 LREREKEGDEFDDKEVF-VTGAYRKQQEEVKKHREQEA 162
>AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical
protein C18G1.6 protein.
Length = 464
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 303 ECSCGXKYSPXEPCGTFSHTMFNN 232
E SC Y P +PC +HT F N
Sbjct: 111 EGSCPSTYGPAKPCFYVAHTFFAN 134
>AF039051-3|AAB94261.2| 347|Caenorhabditis elegans Hypothetical
protein C14C6.3 protein.
Length = 347
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 153 IDFIRHEDWPSSSPDLNPLDYMIWQHLEEKACSNPHPNLESLK 25
+D DW +LNP DY + + K SN +ESLK
Sbjct: 305 MDIRETNDWVYRVGELNPYDYFMPHWIPLKFASNNSTIVESLK 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,001,330
Number of Sequences: 27780
Number of extensions: 314566
Number of successful extensions: 835
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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