Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0603
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    37   2e-04
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.7  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = -2

Query: 237 NNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEKAC 58
           N +  VF  D+A  H +  T+  L     D + H   P  SPDL P DY +++ L+    
Sbjct: 236 NRKGVVFHHDNARPHTSLVTRQKLLELGWDVLPH---PPYSPDLAPSDYFLFRSLQNSLN 292

Query: 57  SNPHPNLESLKTSLIK 10
                N + +K+ LI+
Sbjct: 293 GKNFNNDDDIKSYLIQ 308


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 490 FFIRKKISRYFFSAYRFQQSAGISSVSRFIRRAF 591
           +FIR  +  Y  +A  +      +S+ +FI  AF
Sbjct: 284 YFIRGCLQTYLINASTYLNEVHTASLRKFILSAF 317


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 490 FFIRKKISRYFFSAYRFQQSAGISSVSRFIRRAF 591
           +FIR  +  Y  +A  +      +S+ +FI  AF
Sbjct: 322 YFIRGCLQTYLINASTYLNEVHTASLRKFILSAF 355


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = -3

Query: 374 LMVWLGVSYWGLTEVH 327
           L+++LG++  G+T++H
Sbjct: 6   LLMYLGITCQGVTDIH 21


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 124 GPVFVPDEVDFTRRQP 171
           G V+  DEV+F +R+P
Sbjct: 570 GAVWTVDEVEFYKRRP 585


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 318  ERCKXECSCGXKYSPXEPCGTFSHTMFNN 232
            ER   + S   +YS    CG F H   N+
Sbjct: 1580 ERVMLKASEDYRYSVRGLCGNFDHDSTND 1608


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 486 KFFHPKKDFPIFF 524
           K F+  KDF IFF
Sbjct: 113 KLFYHAKDFDIFF 125


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 486 KFFHPKKDFPIFF 524
           K F+  KDF IFF
Sbjct: 113 KLFYHAKDFDIFF 125


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKT 171
           CS+T + +  K+R  L + R   T
Sbjct: 349 CSVTNSPHQKKLRFHLAKERKAST 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,649
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)