Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0603
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53550.1 68418.m06654 transporter, putative similar to iron-p...    30   1.4  
At5g58100.1 68418.m07270 expressed protein                             29   3.3  
At5g62530.1 68418.m07848 delta-1-pyrroline-5-carboxylate dehydro...    28   4.3  
At1g78895.1 68414.m09197 expressed protein                             28   4.3  
At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.6  

>At5g53550.1 68418.m06654 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 669

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 432 SEEASNRIPACPTRSFSILAHGMAGSFLLGLNRGTF 325
           +++ +  +  C    +SI   G  GS+LLGLNR T+
Sbjct: 104 TKQENTVVQTCAVACYSIAVGGGFGSYLLGLNRITY 139


>At5g58100.1 68418.m07270 expressed protein 
          Length = 945

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 394 RWTRGN-TVARFFTTVCVHLIILFVVALFYGKNFFIRKKISRYFFSAYRFQQSAGISSVS 570
           R+  GN +V++   T+CV   ILF+ +L YG +   RK      FS +  +  +   S S
Sbjct: 3   RFGAGNRSVSKLVLTICV--AILFIPSLSYGASQGNRKTAKSSVFSLFNLRDKSRFWSES 60

Query: 571 RF 576
            F
Sbjct: 61  VF 62


>At5g62530.1 68418.m07848 delta-1-pyrroline-5-carboxylate
           dehydrogenase (P5CDH) identical to
           delta-1-pyrroline-5-carboxylate dehydrogenase precursor
           [Arabidopsis thaliana] gi|15383744|gb|AAK73756;
           identical to cDNA delta-1-pyrroline-5-carboxylate
           dehydrogenase precursor (P5CDH) nuclear gene for
           mitochondrial product GI:15383743; contains Pfam profile
           PF00171:aldehyde dehydrogenase (NAD) family protein
          Length = 556

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 132 DWPSSSPDLNPLDYMIWQ-HLEEKACSNPHPNLESL 28
           DW    PD+  +DY+ WQ   +  ACS    + +S+
Sbjct: 306 DWKVLGPDVQEVDYVAWQCDQDAYACSGQKCSAQSM 341


>At1g78895.1 68414.m09197 expressed protein
          Length = 164

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 400 TRGNTVARFFTTVCVHLIILFVVALFYGKNFFIRKKISRYFFSA 531
           T  N VAR   TV     +L V A  + K  F++  I  YF SA
Sbjct: 70  TASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLYFLSA 113


>At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 473

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 224 GYSNKIRRQL---IERRAHKTGWRRVKSTSSGTKTGPPP 117
           G+S +  R++   +ER  H+  W   +++  G K+ PPP
Sbjct: 276 GFSEEQAREIAVALERSGHRFLWSLRRASPVGNKSNPPP 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,924
Number of Sequences: 28952
Number of extensions: 296422
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)