Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0602
         (680 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.17 
UniRef50_Q6BY22 Cluster: Similar to CA3865|IPF4608 Candida albic...    36   1.2  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = -1

Query: 107 FLLHGWLDELTAYLVLSGYCSP 42
           FLL  W+DELTA+LVLSGY SP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q6BY22 Cluster: Similar to CA3865|IPF4608 Candida albicans
           IPF4608 unknown Function; n=1; Debaryomyces
           hansenii|Rep: Similar to CA3865|IPF4608 Candida albicans
           IPF4608 unknown Function - Debaryomyces hansenii (Yeast)
           (Torulaspora hansenii)
          Length = 247

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 354 PAIFVLLFYILHLTLRYAVEEKTNCNGTMATESNSKLSECP 232
           P  +V    +LHL  +Y++E+ TN NG M+  ++ K+ ECP
Sbjct: 116 PVKYVNQIKLLHLGKKYSIEDFTN-NGNMSLVNDLKIKECP 155


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,313,223
Number of Sequences: 1657284
Number of extensions: 11945914
Number of successful extensions: 23195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23192
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)