Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0602
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0147 + 20194244-20195717,20195953-20195969                       31   1.1  
11_06_0129 - 20397179-20397537,20397749-20400497                       28   6.0  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    28   7.9  

>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 178 DFILTDMFKPNGNQRHK*-DVIPFFFYCMDGW 86
           D I TD F+  G+QRH+    +P FFY +D W
Sbjct: 135 DLIATDSFR-RGHQRHRSRHPMPLFFYRLDHW 165


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 442 FYAVENVKKLALNTLYKCFAAEKNAVRNL 356
           +Y    V KL  +   K FAAE NA+RNL
Sbjct: 755 YYVAVKVLKLQTSGALKSFAAECNALRNL 783


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 435 LSRTLKNSH*THSINVSRQKRMRYVICPAIFVLLFYILHLTLRYAV 298
           L  +L+N H  H+I++    RM+ V+  A F     + HL LR  V
Sbjct: 732 LLESLQNLHKIHTIDIGGSSRMKSVMWEAGFTSPRRLRHLRLRSLV 777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,530
Number of Sequences: 37544
Number of extensions: 315714
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)