Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0602
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +2

Query: 422 NVLDSVEVSSY-LYGMGPFAYVCR*--GHCSNAYKTLVNFYASENVKELALS-TLVDVKE 589
           N + +V+  S+ L    P+ Y+     G C      L+ ++      ++ALS TLV +  
Sbjct: 91  NRIQNVQTLSFILENSRPYVYLALHYKGGCIGVQNILIKYF---RCADMALSSTLVQLGA 147

Query: 590 AVVPRNFSLKFQGDC 634
            V P N S+K  G C
Sbjct: 148 TVAPANGSIKVAGAC 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,513,389
Number of Sequences: 59808
Number of extensions: 393427
Number of successful extensions: 798
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)