Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0602
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    27   9.4  

>AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical
           protein Y47D9A.5 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 500 CSNAYKTLVNFYASENVKELALSTLVDVKEAVVPRNFSLK 619
           C N Y+T +  +A+ N+K++ ++ L  +++   P+  SLK
Sbjct: 333 CGNNYRTELGHFANPNLKDIEMTLLERLQKNENPQVESLK 372


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 414 SH*THSINVSRQKRMRYV-ICPAIFVLLFYILHLTLRYAVEE 292
           SH T S++V   + +  V I  A+F++++ +L L++RY   E
Sbjct: 288 SHFTASVDVDSSEFLYIVTISQAVFIVVYPVLSLSMRYFYAE 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,953
Number of Sequences: 27780
Number of extensions: 305024
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)