Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0602
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   4.7  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   4.7  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   4.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -2

Query: 400 LYKCFAAEKNAVRNLSCHLRAFVLYITSHFE 308
           LYKC AA K      S  L  + L    H +
Sbjct: 468 LYKCIAASKVGSAEHSARLNVYGLPFIRHMD 498


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 108 FFIAWMVGRAHSLPG 64
           F  AW +   HS PG
Sbjct: 8   FIAAWFIACTHSFPG 22


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 108 FFIAWMVGRAHSLPG 64
           F  AW +   HS PG
Sbjct: 8   FIAAWFIACTHSFPG 22


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 108 FFIAWMVGRAHSLPG 64
           F  AW +   HS PG
Sbjct: 8   FIAAWFIACTHSFPG 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,629
Number of Sequences: 438
Number of extensions: 3500
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)