Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0601
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   1.9  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    27   1.9  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   2.5  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   10.0 

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 384 YVQNIPTYCLAHLWRCPVLNRSLCEWA 304
           Y+QNIP       +RC  ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 46  NHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 135
           +HFDPS + +K+V+      + K +S  KH
Sbjct: 43  SHFDPSSYKQKLVSVRETQRNRKFSSLQKH 72


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +1

Query: 4   HEKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH*MD 144
           H K+   K ++ H+N + P  HS + +   + A  +  ++++ H  D
Sbjct: 116 HTKETNSKSSTLHSNPYCPEHHSIRTLPSAVTATTSNISTSSSHRSD 162


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 425 LTSPLFEIRHWNGVTSKIYRLTAWLICGVVP 333
           L  P F + HW     + Y    WL C  +P
Sbjct: 251 LEMPFFALSHWYAFRIEDYDTPTWLSCARLP 281


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 4   HEKQRTKKEASEHT-NHFDPSGHSRKIVTKLMNAEHN 111
           H    T   AS  + NHF+ +GH    +T  +N+ +N
Sbjct: 245 HNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 307 PLTEAAI*NGTTPQMSQAVSRYILDVTPFQCLISNNGLVSPELL 438
           P+T +++ N +TP  S  V      +T +  L S+  + S  +L
Sbjct: 563 PITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVL 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,182
Number of Sequences: 5004
Number of extensions: 42875
Number of successful extensions: 248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)