Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0601
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      31   0.84 
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)               29   2.6  
SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)                 29   2.6  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 28   4.5  
SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            27   7.9  

>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +1

Query: 10  KQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 132
           K R+K+EA  +TN F P GH RK++ K  N E N+    +K
Sbjct: 24  KGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNRAAKPSK 64


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 128  VFEVFLLCSAFMSFVTIFLEC-PDGSKWLVCSDASFLVRC 12
            VF V +L     S + + L C P  S  L CS +SFL+ C
Sbjct: 1181 VFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLLPC 1220


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 7   EKQRTKKEA--SEHTNHFDPSGHSRKIVTKLMNAEHNKKTSN 126
           +K R  K+A  S++  H++   H R +V+KL+   HN   +N
Sbjct: 489 KKDRMHKKAIKSKNQQHWEAFKHQRNLVSKLIKDSHNDYLNN 530


>SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)
          Length = 346

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 164 MASRRTIELPNERRTLLRIPEECSGGCSSQNRWNILGVFLLT 289
           MA+RRT  + +   T+L+IP++ S G  +      LG+FL T
Sbjct: 55  MAARRTAMIEDNTGTVLKIPKKSSAGYKTSK----LGMFLAT 92


>SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)
          Length = 431

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 140 WIADQ*TTMASRRTIELPNERRTLLRIPEECSGGCSSQNRWNILGVFLLTQNF 298
           WI    T  A   +++L       L +PE  +  CS   ++N  GVF LTQN+
Sbjct: 338 WIHTHPTQTAFMSSVDLHTHCSYQLMMPEAIAIVCSP--KYNETGVFTLTQNY 388


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 164 MASRRTIELPNERRTLLRIPEEC 232
           + S RT  +PN  RTLL+IP  C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483


>SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 117 DFKHQTLDGLLINRQLWLAEGLLSCQTKGGRYCGYPRSVRVXARL 251
           +++ Q L G L   QLW+   + SC ++   +CG    + +   L
Sbjct: 53  EYRQQLLSGTLT--QLWVVASMRSCTSRYTGFCGVKEEINLQQAL 95


>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 7   EKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 135
           +K+  KKE +++ + F   G ++  + K    +H+KK  + +H
Sbjct: 352 QKEEFKKEETDYLDVFKKGGTTKDKIEKKDKKKHHKKHKDKEH 394


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 190 QLNSPSASHSCLLISNPSSVW 128
           Q  S SASH C  +SNP S W
Sbjct: 528 QCVSASASHRCGRVSNPGSNW 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,376,189
Number of Sequences: 59808
Number of extensions: 328820
Number of successful extensions: 850
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)