Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0601
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    29   1.6  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    28   4.9  
At2g42670.1 68415.m05281 expressed protein                             28   4.9  
At2g38510.1 68415.m04732 MATE efflux protein-related contains Pf...    28   4.9  

>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 51  LRSVRAFEKDRHETHERRAQQEDFKHQTLDGLLINRQLW 167
           + S RAF + R+   +++ QQ+ F   T  GL+    LW
Sbjct: 127 INSQRAFNEIRYRHMQQQEQQQHFHFTTARGLVSGHSLW 165


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 175 SASHSCLLISNPSSVWCL 122
           SAS SCL + NP+S W +
Sbjct: 96  SASESCLAVKNPTSPWII 113


>At2g42670.1 68415.m05281 expressed protein
          Length = 241

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 72  EKDRHETHERRAQQEDFKHQ-TLDGLLINRQLWLAE 176
           E DRH T+ R++++ED   +  +DG ++    WL E
Sbjct: 185 EHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEE 220


>At2g38510.1 68415.m04732 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 244 LVSESMEHPRRFFAHTKFLLRPLTEAAI 327
           L++++M HP R F  T+ L  PLT +AI
Sbjct: 137 LLAQAMLHPLRTFLRTQGLTSPLTISAI 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,354,904
Number of Sequences: 28952
Number of extensions: 226235
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)