Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0600
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588...    28   6.3  

>08_01_0678 +
           5878291-5878461,5879722-5879984,5881658-5881729,
           5881807-5881878,5882092-5882166,5882443-5882517,
           5883623-5883667,5883767-5883831,5883919-5884203,
           5884234-5884298,5884435-5884636,5884735-5884905,
           5885237-5885355,5886699-5886909,5887007-5887238,
           5887325-5887475,5887547-5887945
          Length = 890

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 507 YCTRPLRWGIQN-*HYYFSPPQR 572
           Y TRP+RWG+ N   +Y   P R
Sbjct: 314 YVTRPVRWGVSNTGKFYMGEPNR 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,355
Number of Sequences: 37544
Number of extensions: 275076
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)