Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0600
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.6  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   8.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 566 TKILIINGPRNWCRESKTHINISLSIKYMYFLHGYQVSKSSD 691
           TK+ I+ G  +W  +++T+  +  SI  +     Y + +  D
Sbjct: 211 TKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDD 252


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 439 FILRRYN--CNFILVTIK*DNLCTTTVPVRFAGAFKIN 546
           F++R+    CN++LV++   +LC   + +  A  ++I+
Sbjct: 67  FLVRKLRRPCNYLLVSLAVSDLCVALLVMPMALLYEIS 104


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 128 NFNSSGNYDKDIIYCLRIV 72
           N+N++ NY+K + Y +  +
Sbjct: 95  NYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 128 NFNSSGNYDKDIIYCLRIV 72
           N+N++ NY+K + Y +  +
Sbjct: 333 NYNNNNNYNKKLYYNINYI 351


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 636 YPLSTCIFYMDT 671
           YPL+ C++Y  T
Sbjct: 298 YPLTGCLYYFST 309


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 128 NFNSSGNYDKDIIYCLRIV 72
           N+N+  NY+K + Y +  +
Sbjct: 95  NYNNDNNYNKKLYYNINYI 113


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 522 LRWGIQN*HYYFSPPQRFSLLTAPATG 602
           LRW  +N  ++   P+R +L+   A G
Sbjct: 186 LRWVSENIEWFGGNPKRITLIGLSAGG 212


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 522 LRWGIQN*HYYFSPPQRFSLLTAPATG 602
           LRW  +N  ++   P+R +L+   A G
Sbjct: 57  LRWVSENIEWFGGNPKRITLIGLSAGG 83


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 522 LRWGIQN*HYYFSPPQRFSLLTAPATG 602
           LRW  +N  ++   P+R +L+   A G
Sbjct: 186 LRWVSENIEWFGGNPKRITLIGLSAGG 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,056
Number of Sequences: 438
Number of extensions: 3947
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)