Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0599
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    99   7e-22
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          28   1.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 98.7 bits (235), Expect = 7e-22
 Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
 Frame = +2

Query: 290 HRRLSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTK 463
           H  LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     
Sbjct: 113 HSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENAL 172

Query: 464 QRLFLTILLGFYFTIYKHMNI*RLLLQLLIEFMGSTFFIATGFHGIPVIIGTLFLLICYI 643
           + L++TI L F F   +          +     G++F+ ATG HGI +I+GT+ LL+   
Sbjct: 173 KGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATY 232

Query: 644 RHLNNHFSKNHHFGF 688
                H +  HH GF
Sbjct: 233 NIYTYHLTNTHHNGF 247



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 159 RDISREGTYQGKHTILVNKGLR*G 230
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 576 KKVDPINSISNCKRSLYIF 520
           KK++P NS+S+C R+ ++F
Sbjct: 215 KKIEPSNSLSSCLRNSFVF 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,636
Number of Sequences: 5004
Number of extensions: 36478
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)