Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0598
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UH93 Cluster: Integral membrane protein, putative; n=...    33   8.4  
UniRef50_O74521 Cluster: Conserved fungal protein; n=1; Schizosa...    33   8.4  

>UniRef50_Q4UH93 Cluster: Integral membrane protein, putative; n=1;
           Theileria annulata|Rep: Integral membrane protein,
           putative - Theileria annulata
          Length = 541

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -3

Query: 375 TVHYGVFNLNYHYFIIFN*VNAVSCYENYPNSNKRIHVCIYYSSLI*LWINYNKLKEK 202
           T   GV+ +NY++F+++N       Y+  PN+N+ IH       L  L+  YN L+ +
Sbjct: 167 TEELGVYEMNYYFFLVYN-----KMYQYKPNNNEWIHPVELLLQLTKLY--YNSLENQ 217


>UniRef50_O74521 Cluster: Conserved fungal protein; n=1;
           Schizosaccharomyces pombe|Rep: Conserved fungal protein
           - Schizosaccharomyces pombe (Fission yeast)
          Length = 657

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 136 FKWRKWKLKKDGTKILYFINLVMYYTGCFLCFI 38
           F W   +L K G  ++ FINLV  Y  CF+ FI
Sbjct: 474 FLWDVIQLSKAGAPLVKFINLVERYQSCFVRFI 506


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,838,063
Number of Sequences: 1657284
Number of extensions: 8884954
Number of successful extensions: 15560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15555
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)