Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0598
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.75 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.3  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 97  LYRLFLISIYAI*IVTLFSNQYFNQL 174
           LY  FLI++  + IV LF N+  +++
Sbjct: 438 LYATFLIALKLVWIVALFKNENLSEM 463


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 108 FFNFHLRHLNCDIILQSVF*STNITLAKLLYIFLLIC 218
           +F  HL  L C     S F    I L     + +L+C
Sbjct: 201 YFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLC 237


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 560  SILVWPVLLRIVCILWNHGSYIK 492
            ++LV  V + ++C+L   G+Y K
Sbjct: 1617 AVLVIIVAIIVICVLRGKGNYHK 1639


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,690
Number of Sequences: 336
Number of extensions: 2876
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)