Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0598
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.2  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 348 NYHYFIIFN*VNAVSCYENYPNSNKRIHVCIYYS 247
           NY Y    N  N  + Y NY N+    +  +YY+
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYN 354


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 324 N*VNAVSCYENYPNSNKRIHVCIYY 250
           N ++ +S Y N  N NK+++  I Y
Sbjct: 88  NYISNISNYNNNNNYNKKLYYNINY 112


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 324 N*VNAVSCYENYPNSNKRIHVCIYY 250
           N ++ +S Y N  N NK+++  I Y
Sbjct: 326 NYISNISNYNNNNNYNKKLYYNINY 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,924
Number of Sequences: 438
Number of extensions: 3035
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)