Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0597
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    54   3e-06
UniRef50_Q3LW86 Cluster: Putative uncharacterized protein; n=1; ...    33   4.6  
UniRef50_Q9U679 Cluster: Kinesin-C; n=7; Eukaryota|Rep: Kinesin-...    33   6.1  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = -2

Query: 468 LLLRWVDELTSQLVVKWLLEPIDIYNVNAPPTLRYKF 358
           LLLRWVDELT+ LV+     P  +Y+VNAPPT RYKF
Sbjct: 155 LLLRWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_Q3LW86 Cluster: Putative uncharacterized protein; n=1;
           Bigelowiella natans|Rep: Putative uncharacterized
           protein - Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 224

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 626 KKPLTYKYRFKCLNSIAT*IEKEKS-LSYRYKFSYYENNRKISHALHY*EKNIFYY 462
           KK L+Y  +F     +   I+K+   L    K+SY++N  ++SH   Y  K+IF +
Sbjct: 153 KKELSYNQKFYIWKKVEKTIKKDNFFLLLLNKYSYFKNIFQLSHKFSYFSKSIFLF 208


>UniRef50_Q9U679 Cluster: Kinesin-C; n=7; Eukaryota|Rep: Kinesin-C -
           Strongylocentrotus purpuratus (Purple sea urchin)
          Length = 1624

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -1

Query: 631 AKRNPLLINTGLNVLILSRRELKKKNH*AIDTNSATMRTTEKSHMHYITKKK 476
           ++RN  L+     +LI+++ E+++     ++  S   + T+K H H+I  KK
Sbjct: 341 SQRNKELMKEKKRLLIINKVEIERLEKEKVELTSTLTQQTDKEHQHFIATKK 392


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,026,385
Number of Sequences: 1657284
Number of extensions: 10024453
Number of successful extensions: 20218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20213
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)