Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0597
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   1.4  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   2.4  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = -3

Query: 617 LTYKYRFKCLNSIAT*IEKEKSLSYRYKFSYYENNRKISHALHY*EKNIFYYLDGWTSSH 438
           +TY+   K  N +++ I+KE S   + +  + E    ++H+ H  E+  + +L+ +  S+
Sbjct: 1   MTYEESEKNKNGLSSYIKKEGSSDLKVRVRFREPKLLVTHSGHITEQPKYEHLEQYLDSY 60

Query: 437 PS 432
            S
Sbjct: 61  VS 62


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 340 YNGCPALRTETRYCFTAEXGRA 275
           Y  CP L +  R+CF+A   +A
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 270 YLPARITRRPTTSKYPNLHIISFSN 196
           YLP + +RR  +S+ P++  ISF N
Sbjct: 165 YLPPQSSRRDVSSEKPSIPSISFIN 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,950
Number of Sequences: 5004
Number of extensions: 42790
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)