Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0597
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)               28   7.7  

>SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 522 IVAEFVSIAQ*FFFFNSRRDRIKTFKPVFISKGFLFALICDYLGM 656
           ++A+F  I+Q F FF +R   ++   P+F S  FL  ++   +GM
Sbjct: 40  LIAQFFLISQSFLFFVARFVWLRVGPPLFKSPNFLARMLMYLVGM 84


>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
          Length = 430

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 358 LRSRYSYNGCPALRTETRYCFTAEXGRAVVPTRADHKTSYHQ 233
           LR  +S   CPA + E R C   + G      R+  K+S HQ
Sbjct: 110 LRHSFSQGKCPAFKQECRKC--KKVGHFARVCRSTRKSSVHQ 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,180,552
Number of Sequences: 59808
Number of extensions: 306528
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)