Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0597
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   1.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.0  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.0  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.0  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.0  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.0  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 623 KPLTYKYRFKCLNSIAT*IEKEKSLSY 543
           + +T KYR KC+    T IE  ++  Y
Sbjct: 33  REMTSKYRKKCIGETKTTIEDVEATEY 59


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 554 SLSYRYKFSYYENNRKISHALHY 486
           SLS  YK+S Y N    +  L+Y
Sbjct: 84  SLSNNYKYSNYNNYNNYNKKLYY 106


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 548 SYRYKFSYYENNRKISHALHY 486
           S++ K ++Y NN+ I   L+Y
Sbjct: 301 SFKRKVNFYPNNQDIEKFLNY 321


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 554 SLSYRYKFSYYENN--RKISHALHY*EK 477
           SLS  Y +S Y NN  +++ + ++Y E+
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 554 SLSYRYKFSYYENN--RKISHALHY*EK 477
           SLS  Y +S Y NN  +++ + ++Y E+
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 554 SLSYRYKFSYYENN--RKISHALHY*EK 477
           SLS  Y +S Y NN  +++ + ++Y E+
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 554 SLSYRYKFSYYENN--RKISHALHY*EK 477
           SLS  Y +S Y NN  +++ + ++Y E+
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 554 SLSYRYKFSYYENN--RKISHALHY*EK 477
           SLS  Y +S Y NN  +++ + ++Y E+
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 554 SLSYRYKFSYYENNRKISH 498
           SLS  Y ++ Y NN K  H
Sbjct: 317 SLSNNYNYNNYNNNYKPLH 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,211
Number of Sequences: 438
Number of extensions: 3440
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)