Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0596
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    83   5e-17
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    28   1.2  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   3.6  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 82.6 bits (195), Expect = 5e-17
 Identities = 38/79 (48%), Positives = 50/79 (63%)
 Frame = +2

Query: 257 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 436
           L++GAPD+A+PR+NN  F              + E G G G TVYPPLSS  +H G ++D
Sbjct: 92  LMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAID 151

Query: 437 LAIFSLHLAGISSIIGAIN 493
           LAI SL L GISS +G++N
Sbjct: 152 LAILSLQLTGISSTLGSVN 170



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +3

Query: 621 YNIINRSKLKYIIFDPAGGGDPILYPHLFWFFGHP 725
           + + +   L    + P GGGDP+LY HLFWFFGHP
Sbjct: 214 FMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHP 248



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 541 QLPLFG*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 660
           Q+PLF  A+ IT+          AG + +L +DRNLNTSF
Sbjct: 187 QMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSF 226



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +3

Query: 42  RDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAH 188
           +DI  LY                    EL  PGS  L G+ Q+YN  ++AH
Sbjct: 18  KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAH 68


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 157 SSPINDPGFPNSARIKSLKDVPIIPDQIPKIKYNVPISLVPPXXSXSSS 11
           SSP+N+    +   +K    +    ++I K K N+   L+P   S SSS
Sbjct: 102 SSPLNETEHLSEENLKIESSITFTSEEIEKEKENIKSVLLPSVQSISSS 150


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 398 LSSNIAHRGRSVDLAIFSLHLAGISSIIGAINF 496
           ++ NI + GRS  + +  L +AGIS I  A+++
Sbjct: 109 VAPNIYYMGRSSVINVGGLRIAGISGIYSAMDY 141


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 313 TPTPLPYIINFKKNCRKWCRNRMNS 387
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,966
Number of Sequences: 5004
Number of extensions: 43650
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)