Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0596
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger) fa...    30   1.8  
At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger) fa...    30   1.8  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    29   4.1  
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           28   5.5  
At1g18960.1 68414.m02359 myb family transcription factor contain...    28   5.5  
At1g67160.1 68414.m07640 F-box family protein similar to F-box p...    27   9.6  

>At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 44  RYWNIIFYFWYLIRNNW 94
           RYW I+F FW+L+   W
Sbjct: 340 RYWAILFIFWFLVFGIW 356


>At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 363

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 44  RYWNIIFYFWYLIRNNW 94
           RYW I+F FW+L+   W
Sbjct: 336 RYWAILFVFWFLVFGIW 352


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 280 SIPTNK*YKILTPTPLPYIINFKKNCRKW 366
           S+P +   +IL  TP   ++ FK  C+KW
Sbjct: 4   SLPFDLILEILQRTPAESLLRFKSTCKKW 32


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 674 SSRIKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHPNK 549
           S++  N+   F +V      P  T  D ++ +A + T HP+K
Sbjct: 594 STKSNNNESNFTAVRTTSQTPTTTAPDASDADAAVATGHPSK 635


>At1g18960.1 68414.m02359 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain;
           contains similarity to transcription factor GI:9759592
           from [Arabidopsis thaliana]
          Length = 307

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 480 IIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGG 319
           I   +P K  E++    +  L   L E G    H    PFS +L E  NI  GG
Sbjct: 85  IAQHLPGKTEEEVKMFWNTKLKKKLSEMG--IDHVTHRPFSHVLAEYGNINGGG 136


>At1g67160.1 68414.m07640 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 450

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 686 WVSSSSRIKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAH 558
           WV   SR   D F F ++++ V    K G DNN+   + P  H
Sbjct: 162 WVDDKSR---DYFVFCNLSSYVAYHHKRGDDNNSWKVLQPIKH 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,060,454
Number of Sequences: 28952
Number of extensions: 226786
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)