Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0595
         (662 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0YLA0 Cluster: Rod shape-determining protein MreD, put...    36   0.66 
UniRef50_Q55AX3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_Q0YLA0 Cluster: Rod shape-determining protein MreD,
           putative; n=3; Geobacter|Rep: Rod shape-determining
           protein MreD, putative - Geobacter sp. FRC-32
          Length = 161

 Score = 36.3 bits (80), Expect = 0.66
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = -1

Query: 131 LTVFFSTFVTSLYYLLLWFLFDMIRGLY 48
           LTVFF+T VT L+ +LL F+F    G+Y
Sbjct: 101 LTVFFATIVTGLFNMLLLFIFSAANGIY 128


>UniRef50_Q55AX3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1092

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 19/51 (37%), Positives = 32/51 (62%)
 Frame = -1

Query: 434 NFKL*YGCLLFLLGIINKLYFVSIQANGLLNQEYTIIVNIF*SVNRFLSII 282
           +F+L Y  +LFL  I+N+ +  SIQ NGL+  EY  I +++ + N   S++
Sbjct: 6   SFQL-YFIILFL-SILNQRFGNSIQINGLIETEYDCIHSLYETFNLMSSVV 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,518,796
Number of Sequences: 1657284
Number of extensions: 10743911
Number of successful extensions: 24813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24764
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)