Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0595
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 29 0.79
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.4
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 2.4
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 27 3.2
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.2
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 26 4.2
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 26 4.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.4
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.7
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 28.7 bits (61), Expect = 0.79
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 645 QTFSFQYWIRFLL-VRTFLNLFYGKGVPVGYEEDF 544
Q F++ W FL + T++ + Y + P G+EED+
Sbjct: 280 QFFAYFGWFPFLFYITTYVGILYLRHAPKGHEEDW 314
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 489 EKSAILNNSSKTNYYLNL*NPLHSLQEHPSHKIN 590
E SA+ + S NY ++ N H+L ++P ++N
Sbjct: 697 ESSAVFLSKSPENYLSSINNGHHALNDNPPSQVN 730
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +3
Query: 447 RIVEKSSLTNNSGSEKSAILNNSSKTNYYLNL*NPLHSLQEHPSHKINSRKCEPTKT*SN 626
R++E + L + + + A + + N L S +EH SHKI E S
Sbjct: 265 RVMETAELQHQAELQDFASNIEQKANSLIMEYKNELQSAEEHFSHKIKELTSENELKISR 324
Query: 627 IGTKKSDQLEK 659
+ +K L+K
Sbjct: 325 LQEEKDSLLKK 335
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = -1
Query: 464 RFFDNSSKSLNFKL*YGCLLFLLGIINKLY--FVSIQANGLLNQEYTIIVNI 315
+F+D S++ + F+ + ++F +N LY F+++ + G+L E TII N+
Sbjct: 385 KFYDPSNEDIQFRYIFLKMVFWTARVN-LYQCFITLDS-GILEDEETIIGNL 434
>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 660 TFPVGQTFSFQ--YWIRFLLVRTFLNLFYGKGVPVGYEEDFRDLDSNLFLKNYL 505
TFPV +T + W++ L F ++ K +G+ D + SNLFLK YL
Sbjct: 181 TFPVNRTCFKETALWMK-LYGNDFCYIY--KDSEIGHMHDENYMVSNLFLKGYL 231
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 606 VRTFLNLFYGKGVPVGYEEDFRDLDSNLFLKNYLEWRIFRSH 481
+R LN+ +G + + LD+++ KN +WR++ H
Sbjct: 96 LRYLLNIIDKEGERLEQYMESSSLDASILPKNLQQWRVYIEH 137
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 606 VRTFLNLFYGKGVPVGYEEDFRDLDSNLFLKNYLEWRIFRSH 481
+R LN+ +G + + LD+++ KN +WR++ H
Sbjct: 96 LRYLLNIIDKEGERLEQYMESSSLDASILPKNLQQWRVYIEH 137
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 476 ICKRRFFDNSSKSLNFKL*YGCLLFLLGI-INKLYFVSIQANGLLNQEYTIIVNIF*SVN 300
+C + + SS + + + Y C+ FLL + +F + L + YT +V+I +V
Sbjct: 533 LCTQTYDQTSSTANRYLIFYACVDFLLAAEVILRFFAYLPDYRLFFRRYTNLVDIVLAV- 591
Query: 299 RFLSIIKLYP 270
L+++ L P
Sbjct: 592 --LNLVTLLP 599
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 645 QTFSFQYWIRFLLVRTFLN 589
+ FSF+++I +LL+ FLN
Sbjct: 1309 EAFSFEFYILYLLLGDFLN 1327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,766
Number of Sequences: 5004
Number of extensions: 50127
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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