Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0595
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   5.9  

>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 465 SLTNNSGSEKSAILNNSSKTNYYLNL*NPLHSLQEH 572
           ++T  S     + + N   TN+Y NL N LH L+EH
Sbjct: 659 NVTTPSNMHFPSAMTNQKTTNFYNNL-NQLHQLREH 693


>SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 415

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -1

Query: 449 SSKSLNFKL*YGCLLFLLGIINKLYFVSIQANGLLNQEYTIIV 321
           SS + NF+  +  +LF L +++K  F ++    +L+ +YT+ +
Sbjct: 334 SSFNANFRRAFKDILFRLCVLHKGQFDAVNTRSVLDDDYTVAI 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,996,126
Number of Sequences: 59808
Number of extensions: 317632
Number of successful extensions: 774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)