Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0595
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    27   9.0  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 218 TDTILSIAPIFKQSCIL*RGFHIALQVARLTVFFSTFVTSLYYLL 84
           T  I+S + IF +S I    FH+  Q+  + +F      S+ YLL
Sbjct: 89  TSVIISFSLIFVESYI----FHVIQQIIHILLFLLAIANSIKYLL 129


>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 426 FKV*RFRRIVEKSSLTNNSGSEKSAILNNSSKTNYYLNL*NPLHSLQEHPSHKINSRKCE 605
           FK+   + ++   SL  N  +    ILN S+KT+    L + L  L+   S +  + +C 
Sbjct: 532 FKIENIQNVICVKSLAENVNALSMDILNLSTKTSKLSVLADHLVGLKMDKSEQCGNWQCR 591

Query: 606 PTK 614
           P +
Sbjct: 592 PLR 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,444
Number of Sequences: 27780
Number of extensions: 265489
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)