Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0595
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34600.1 68415.m04251 expressed protein                             27   8.4  
At1g14970.1 68414.m01788 expressed protein contains Pfam PF03138...    27   8.4  

>At2g34600.1 68415.m04251 expressed protein
          Length = 148

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 444 RRIVEKS-SLTNNSGSEKSAILNNSSKTNYY-LNL*NPLHSLQEHPSHKINS 593
           R + EKS SL ++ GS+   I NNS++ +Y   ++   LHS  +  S +I +
Sbjct: 89  RDVEEKSLSLRSSDGSDPPTIPNNSTRFHYQKASMKRSLHSFLQKRSLRIQA 140


>At1g14970.1 68414.m01788 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;  previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 562

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 374 FVSIQANGLLNQEYTIIVNIF*SVNRFLSIIKLYPHF 264
           F+ I+ANG LNQ+ T I N   +V  +L+   + P+F
Sbjct: 158 FIFIEANGGLNQQRTSICNAV-AVAGYLNATLVIPNF 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,910,870
Number of Sequences: 28952
Number of extensions: 233984
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)