Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0594
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    29   0.51 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   3.6  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   6.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   6.2  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 475 VATTIVLCPYLDNVYITLVSEIRKSFCTERYY 380
           + TT+    Y+ ++  + +S+IR+ +CT  +Y
Sbjct: 104 IGTTVGFAAYMLDIVTSWLSDIRRGYCTSHWY 135


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 48  HASLSRKKYINLIMPVYESR 107
           + SLS  KYIN + P YE R
Sbjct: 457 NTSLSYSKYINALQPWYEER 476


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 48   HASLSRKKYINLIMPVYESRALHAYCVSVVIRIL 149
            HA L+R+K   + + +YE    ++Y V+  +R+L
Sbjct: 902  HAGLNRQKPDKIDLDLYEPLPENSYLVAAELRVL 935


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 557 ARSFLLRVRLLYTDYCNKAQIAISNFTCSHNYSIMSLLRQCIHNV 423
           + S  + + +L   Y  KA    + F    NY +++LL +  HN+
Sbjct: 284 SNSTSMNMDILLDSYLTKAMDIHATFIQKLNYDLINLLYEPFHNI 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,650
Number of Sequences: 5004
Number of extensions: 43356
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)