Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0594
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450...    29   2.8  
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168...    29   3.7  
03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927     28   4.8  

>05_01_0522 -
           4506667-4507254,4507474-4507824,4507967-4508163,
           4508324-4508582,4508656-4508868,4508946-4509071,
           4509159-4509296,4509376-4509721,4509822-4510088,
           4510427-4510616,4510700-4510784,4510885-4511072,
           4511262-4511457,4512027-4512113
          Length = 1076

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 57  LSRKKYINLIMPVYESRALHAYCVSVVIRIL-NKFL*VTNLLNY*NIHYV 203
           L R  YIN I+    S  L AYCV   I +L NKF+ +  + NY  + ++
Sbjct: 843 LERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFI-IPEISNYAGMFFI 891


>01_06_0715 +
           31416338-31416500,31416601-31416710,31416808-31416880,
           31416988-31417135,31417867-31418133,31418234-31418576,
           31418665-31418802,31419389-31419514,31419626-31419838,
           31419918-31420164,31420247-31420446,31420538-31420891,
           31420984-31421568
          Length = 988

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 57  LSRKKYINLIMPVYESRALHAYCVSVVIRILNKFL*VTNLLNY*NIHYVRQQGLFVSV 230
           L R  YIN I+  + S  L AYC    I +L     +  L N   I ++   GLF+S+
Sbjct: 756 LQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFL---GLFISI 810


>03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927
          Length = 468

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -1

Query: 536 VRLLYTDYCNKAQIAISNFTCSHNYSIMSLLRQ 438
           V+L Y DY  +A+IAI+NF    NY+  +L+ Q
Sbjct: 318 VKLNYKDYW-RAKIAITNFNYRMNYTQWTLVAQ 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,256,659
Number of Sequences: 37544
Number of extensions: 211707
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)