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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0594
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24450.1 68417.m03505 starch excess protein-related similar t...    31   0.76 
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (...    28   5.4  
At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family pr...    28   5.4  
At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family pr...    27   7.1  

>At4g24450.1 68417.m03505 starch excess protein-related similar to
           SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -2

Query: 535 LDYCIQITVIKHRLLSVILHVATTI--VLCPYLDNVYITLVSEIRKSFCTERYYMI 374
           L+ C + T+ K RL+S+  +    I  V+C  L+N+ +++V+     FCT+ +Y +
Sbjct: 680 LESCFKTTIEK-RLISLNFNNPPEIIYVICVVLENLCLSIVNNEEIIFCTKDWYRV 734


>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
           (IRX1) nearly identical to gi:12836997
          Length = 985

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 57  LSRKKYINLIMPVYESRALHAYCVSVVIRILNKFL*VTNLLNY*NIHYVRQQGLFVSV 230
           L R  YIN I+  + S  L AYC    I +L     +  L N  ++ ++   GLF+S+
Sbjct: 752 LQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFL---GLFISI 806


>At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 628

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 512 CNKAQIAISNFTCSHNYSIMSLLRQ-CI-HNV 423
           C K Q  + NFT + NY + SL+ Q C  HN+
Sbjct: 284 CPKTQQKLENFTLTPNYVLRSLISQWCTKHNI 315


>At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 612

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 512 CNKAQIAISNFTCSHNYSIMSLL-RQCI-HNV 423
           C K Q  + NFT + NY + SL+ R C  HN+
Sbjct: 282 CPKTQQKLENFTLTPNYVLRSLISRWCAEHNI 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,523
Number of Sequences: 28952
Number of extensions: 193416
Number of successful extensions: 315
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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