BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0594 (590 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g24450.1 68417.m03505 starch excess protein-related similar t... 31 0.76 At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (... 28 5.4 At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family pr... 28 5.4 At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family pr... 27 7.1 >At4g24450.1 68417.m03505 starch excess protein-related similar to SEX1 [Arabidopsis thaliana] GI:12044358 Length = 1284 Score = 30.7 bits (66), Expect = 0.76 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -2 Query: 535 LDYCIQITVIKHRLLSVILHVATTI--VLCPYLDNVYITLVSEIRKSFCTERYYMI 374 L+ C + T+ K RL+S+ + I V+C L+N+ +++V+ FCT+ +Y + Sbjct: 680 LESCFKTTIEK-RLISLNFNNPPEIIYVICVVLENLCLSIVNNEEIIFCTKDWYRV 734 >At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (IRX1) nearly identical to gi:12836997 Length = 985 Score = 27.9 bits (59), Expect = 5.4 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +3 Query: 57 LSRKKYINLIMPVYESRALHAYCVSVVIRILNKFL*VTNLLNY*NIHYVRQQGLFVSV 230 L R YIN I+ + S L AYC I +L + L N ++ ++ GLF+S+ Sbjct: 752 LQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFL---GLFISI 806 >At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family protein / U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain Length = 628 Score = 27.9 bits (59), Expect = 5.4 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = -1 Query: 512 CNKAQIAISNFTCSHNYSIMSLLRQ-CI-HNV 423 C K Q + NFT + NY + SL+ Q C HN+ Sbjct: 284 CPKTQQKLENFTLTPNYVLRSLISQWCTKHNI 315 >At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family protein / U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain Length = 612 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = -1 Query: 512 CNKAQIAISNFTCSHNYSIMSLL-RQCI-HNV 423 C K Q + NFT + NY + SL+ R C HN+ Sbjct: 282 CPKTQQKLENFTLTPNYVLRSLISRWCAEHNI 313 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,611,523 Number of Sequences: 28952 Number of extensions: 193416 Number of successful extensions: 315 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 315 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 315 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1171109464 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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