Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0593
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   100   4e-22
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.5  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   7.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 46/94 (48%), Positives = 60/94 (63%)
 Frame = +1

Query: 256 GDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXF 435
           GDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  F                 
Sbjct: 233 GDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGL 291

Query: 436 IV*AHHIFTVGIDIDTRAYFTSATKLLLYQQELK 537
           +V +HH+FTVG+D+DTRAYF++AT ++     +K
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIK 325



 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 31/81 (38%), Positives = 39/81 (48%)
 Frame = +2

Query: 11  ELAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 190
           +LAI SL L GISS                   S  Q+PLF  A+ IT+          A
Sbjct: 151 DLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLA 210

Query: 191 GAITILLTDRNLNTSFFDPAG 253
           G + +L +DRNLNTSF+ P G
Sbjct: 211 GGLFMLFSDRNLNTSFYAPEG 231



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
 Frame = +3

Query: 513 IAVPTGIKIFR*LATIHGTQINYN-PNIL*RLGFVFLFTVGGLTG 644
           IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTG
Sbjct: 318 IAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTG 362


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 264 WVSSPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTA 139
           W+++ AG   DV  F   N +VIA  +  +       +IP A
Sbjct: 383 WMNATAGGPRDVLLFFKENQLVIAGYREATMLKELEKIIPIA 424


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 264 WVSSPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTA 139
           W+     S  DV K      +V+A  + GS       +IPTA
Sbjct: 379 WIEVSGASPRDVAKQLKSQQLVMAGHREGSMYKELKRIIPTA 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,264
Number of Sequences: 5004
Number of extensions: 34610
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)