Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0593
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    29   2.6  
08_02_1243 - 25527523-25527960,25527993-25528604                       28   6.0  
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    28   6.0  

>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 234 HFLILLERRPNFISTFILIFWT 299
           H L+L  R   F STF+L+FWT
Sbjct: 570 HSLLLSSRIGMFFSTFLLLFWT 591


>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 363 KRKKRNFWLFRNNLCYTSNWVIRIYCLS 446
           +R+ R FWLFR   C+   +  RI CLS
Sbjct: 19  RRRGRRFWLFRFRSCFLDRFRRRI-CLS 45


>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 330 IWYNFSYYFTRKRKKRNFWLFRNN 401
           IW  F+   T K K+ +FW+F+ +
Sbjct: 55  IWPKFAVALTNKEKEEDFWVFKGS 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,636
Number of Sequences: 37544
Number of extensions: 181593
Number of successful extensions: 305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)