BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0593 (685 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076... 29 2.6 08_02_1243 - 25527523-25527960,25527993-25528604 28 6.0 05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905... 28 6.0 >09_06_0309 - 22206812-22206884,22207008-22207103,22207531-22207619, 22207738-22207820,22207932-22208048,22208132-22208319, 22208430-22208500,22208570-22208782,22210022-22210081, 22210186-22210476,22210590-22211894 Length = 861 Score = 29.5 bits (63), Expect = 2.6 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +3 Query: 234 HFLILLERRPNFISTFILIFWT 299 H L+L R F STF+L+FWT Sbjct: 570 HSLLLSSRIGMFFSTFLLLFWT 591 >08_02_1243 - 25527523-25527960,25527993-25528604 Length = 349 Score = 28.3 bits (60), Expect = 6.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 363 KRKKRNFWLFRNNLCYTSNWVIRIYCLS 446 +R+ R FWLFR C+ + RI CLS Sbjct: 19 RRRGRRFWLFRFRSCFLDRFRRRI-CLS 45 >05_06_0251 + 26687833-26688120,26689288-26689365,26690499-26690580, 26691155-26691195,26691973-26692143,26693586-26693813, 26694237-26694638 Length = 429 Score = 28.3 bits (60), Expect = 6.0 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +3 Query: 330 IWYNFSYYFTRKRKKRNFWLFRNN 401 IW F+ T K K+ +FW+F+ + Sbjct: 55 IWPKFAVALTNKEKEEDFWVFKGS 78 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,653,636 Number of Sequences: 37544 Number of extensions: 181593 Number of successful extensions: 305 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 302 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 305 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1733104716 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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