Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0592
         (627 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YWA9 Cluster: Putative uncharacterized protein; n=1; ...    38   0.26 
UniRef50_Q6P6C2 Cluster: Alkylated DNA repair protein alkB homol...    33   5.6  
UniRef50_UPI0000DC1FED Cluster: UPI0000DC1FED related cluster; n...    33   7.4  
UniRef50_Q0HWW4 Cluster: Polysaccharide biosynthesis protein pre...    33   7.4  
UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759; ...    33   7.4  

>UniRef50_Q4YWA9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 51

 Score = 37.5 bits (83), Expect = 0.26
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +2

Query: 245 EEYKK*FLELLAEHCIFFLVCLFKYRYYLYVITVYNSLNIFIYVC 379
           E YKK  + ++ ++ +F+L   FK    +Y I++Y SL+  IY+C
Sbjct: 3   EYYKKCTMLIIMKYVLFYLAFHFKLTVCIYDISMYKSLSSLIYIC 47


>UniRef50_Q6P6C2 Cluster: Alkylated DNA repair protein alkB homolog
           5; n=23; Eumetazoa|Rep: Alkylated DNA repair protein
           alkB homolog 5 - Homo sapiens (Human)
          Length = 458

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 594 MVPRGFLVTALITDYIIGGCVLTH 523
           ++P GF+ +A+I DY  GGC+++H
Sbjct: 181 VIPEGFVNSAVINDYQPGGCIVSH 204


>UniRef50_UPI0000DC1FED Cluster: UPI0000DC1FED related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC1FED UniRef100 entry -
           Rattus norvegicus
          Length = 239

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 287 CIFFLVCLFKYRYYLYVITVYNSLNIFIYVCV*LFGNMFI*FC 415
           CI+  +C+  Y YY+Y I +Y    I+IY+CV +   M++  C
Sbjct: 139 CIYMHICICVYMYYIY-IYIY----IYIYMCVCVNVCMYVYVC 176


>UniRef50_Q0HWW4 Cluster: Polysaccharide biosynthesis protein
           precursor; n=1; Shewanella sp. MR-7|Rep: Polysaccharide
           biosynthesis protein precursor - Shewanella sp. (strain
           MR-7)
          Length = 408

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 272 LLAEHCIFFLVCLFKYRYYLYVI---TVYNSLNIFIYVCV*LFGNMF 403
           L+   C+FFL+CLF  RY   VI   +++ SL IF Y+   L  + F
Sbjct: 92  LMISICMFFLMCLFNARYISSVILALSMFYSLLIFRYLQFNLMASRF 138


>UniRef50_Q6ZSJ0 Cluster: CDNA FLJ45488 fis, clone BRTHA2003759;
           n=2; Homo sapiens|Rep: CDNA FLJ45488 fis, clone
           BRTHA2003759 - Homo sapiens (Human)
          Length = 130

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 8/42 (19%)
 Frame = +2

Query: 290 IFFLVCLFKYRY-YLYVIT-------VYNSLNIFIYVCV*LF 391
           I+  +CL+ Y Y YLY+ T       ++  L+IFIY+C+ L+
Sbjct: 51  IYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHIFIYICICLY 92


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,637,195
Number of Sequences: 1657284
Number of extensions: 9676586
Number of successful extensions: 21302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21282
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)