Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0592
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   0.96 
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.0  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   9.0  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 46  SILIVCIA--ISPGRRPLADPFYILTF 120
           SI+ +C A  +SP  RP A+PF  L++
Sbjct: 75  SIIAICFACLLSPSLRPYAEPFIFLSY 101


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 312 KRQTKKKMQCSASNSRNYFLYSSDLDSGRVHTFESVFIDYLTS 184
           K  TKK+     S   ++ L+S    + R+HT +S F+   T+
Sbjct: 446 KLNTKKESSAPLSLVTDFLLHSWPKSAERLHTSQSPFVRIKTA 488


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 520 LKRSKCRRKTIFGDELQRSDAHNNTHNVSYIYLLPAK 410
           L  SKC    I+G  L R       H+ S  Y L AK
Sbjct: 864 LNESKCSHSPIYGSNLIRLAEKLPKHSTSIDYTLYAK 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,680
Number of Sequences: 5004
Number of extensions: 42672
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)