Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0592
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    29   4.0  
01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604     29   4.0  
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184...    27   9.2  

>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 514 RSKCRRKTIFGDELQRSDAHNNTHNVSYIYLLPAKLNKHITEESHTYV 371
           R++  +K I  D +    A      VSY  ++ A LN HIT    T V
Sbjct: 79  RARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHITNGRETVV 126


>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
          Length = 269

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 281 EHCIFFLVCLFKYRYYLYV-ITVYNSLNIFIYVC 379
           +H  FF   L KY  Y Y+ + + N +  ++Y C
Sbjct: 70  KHDFFFFKSLLKYDLYFYIFVHILNKVRGYVYYC 103


>10_08_0364 +
           17217631-17217833,17218134-17218308,17218391-17218474,
           17218561-17218802,17218883-17219108,17219246-17219325,
           17219408-17219492,17219665-17219796,17219927-17220040,
           17220123-17220170,17220413-17220497,17220722-17220834
          Length = 528

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 248 EYKK*FLELLAE---HCIFFLVCLFKYRYYLYVITVY 349
           E+ K    LLAE   HCI  L C F+   YLY+I  Y
Sbjct: 156 EHVKAERNLLAEVDHHCIVKLYCSFQDSEYLYLIMEY 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,515
Number of Sequences: 37544
Number of extensions: 251710
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)