Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0592
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)             32   0.44 
SB_28019| Best HMM Match : KNOX2 (HMM E-Value=0.24)                    28   5.4  
SB_884| Best HMM Match : KNOX2 (HMM E-Value=0.24)                      28   5.4  
SB_58119| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)            27   9.4  
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)             27   9.4  
SB_9411| Best HMM Match : Exo_endo_phos (HMM E-Value=0.19)             27   9.4  
SB_57251| Best HMM Match : Lipase_GDSL (HMM E-Value=0.016)             27   9.4  
SB_27107| Best HMM Match : MazG (HMM E-Value=2.9)                      27   9.4  

>SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)
          Length = 308

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 594 MVPRGFLVTALITDYIIGGCVLTH 523
           +VP+ F+ +A+I DY  GGC+++H
Sbjct: 153 IVPKDFINSAVINDYQPGGCIVSH 176


>SB_28019| Best HMM Match : KNOX2 (HMM E-Value=0.24)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 216 MYARGPSLGLKSIRNNFSNYLQSIAFFFWFVF 311
           +YA G    +  +   F++YLQ+I+ F W  F
Sbjct: 223 IYAMGSFSSIPKVCRQFTDYLQAISRFLWVPF 254


>SB_884| Best HMM Match : KNOX2 (HMM E-Value=0.24)
          Length = 233

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 216 MYARGPSLGLKSIRNNFSNYLQSIAFFFWFVF 311
           +YA G    +  +   F++YLQ+I+ F W  F
Sbjct: 195 IYAMGSFSSIPKVCRQFTDYLQAISRFLWVPF 226


>SB_58119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 216 MYARGPSLGLKSIRNNFSNYLQSIAFFFWFVF 311
           +YA G    +  +   F++YLQ+I+ F W  F
Sbjct: 21  IYAMGSFSSITKVCRQFTDYLQAISRFLWVPF 52


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 598 NNGP*GIFGDRTNYGLYNRRLCP 530
           +NGP  + GD    G+ NRR CP
Sbjct: 351 SNGPVLLLGDSVLRGINNRRFCP 373


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 95   ASGRRPGLIAMHTINIERQLNTG*TIN 15
            AS RRP     + +NI  Q+ TG T+N
Sbjct: 1731 ASARRPAWRFSYAVNINPQMTTGLTVN 1757


>SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)
          Length = 1163

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 598 NNGP*GIFGDRTNYGLYNRRLCP 530
           +NGP  + GD    G+ NRR CP
Sbjct: 474 SNGPVLLLGDSVLRGINNRRFCP 496


>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
          Length = 891

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 598 NNGP*GIFGDRTNYGLYNRRLCP 530
           +NGP  + GD    G+ NRR CP
Sbjct: 302 SNGPVLLLGDSVLRGINNRRFCP 324


>SB_9411| Best HMM Match : Exo_endo_phos (HMM E-Value=0.19)
          Length = 891

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 598 NNGP*GIFGDRTNYGLYNRRLCP 530
           +NGP  + GD    G+ NRR CP
Sbjct: 347 SNGPVLLLGDSVLRGINNRRFCP 369


>SB_57251| Best HMM Match : Lipase_GDSL (HMM E-Value=0.016)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 598 NNGP*GIFGDRTNYGLYNRRLCP 530
           +NGP  + GD    G+ NRR CP
Sbjct: 118 SNGPVLLLGDSVLRGINNRRFCP 140


>SB_27107| Best HMM Match : MazG (HMM E-Value=2.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 598 NNGP*GIFGDRTNYGLYNRRLCP 530
           +NGP  + GD    G+ NRR CP
Sbjct: 118 SNGPVLLLGDSVLRGINNRRFCP 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,648
Number of Sequences: 59808
Number of extensions: 318482
Number of successful extensions: 1425
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)