Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0592
         (627 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062339-1|AAH62339.1|  458|Homo sapiens alkB, alkylation repair...    33   0.83 
AK000315-1|BAA91078.1|  378|Homo sapiens protein ( Homo sapiens ...    33   0.83 
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    33   1.1  

>BC062339-1|AAH62339.1|  458|Homo sapiens alkB, alkylation repair
           homolog 5 (E. coli) protein.
          Length = 458

 Score = 33.1 bits (72), Expect = 0.83
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 594 MVPRGFLVTALITDYIIGGCVLTH 523
           ++P GF+ +A+I DY  GGC+++H
Sbjct: 181 VIPEGFVNSAVINDYQPGGCIVSH 204


>AK000315-1|BAA91078.1|  378|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20308 fis, clone HEP07264. ).
          Length = 378

 Score = 33.1 bits (72), Expect = 0.83
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 594 MVPRGFLVTALITDYIIGGCVLTH 523
           ++P GF+ +A+I DY  GGC+++H
Sbjct: 165 VIPEGFVNSAVINDYQPGGCIVSH 188


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 8/42 (19%)
 Frame = +2

Query: 290 IFFLVCLFKYRY-YLYVIT-------VYNSLNIFIYVCV*LF 391
           I+  +CL+ Y Y YLY+ T       ++  L+IFIY+C+ L+
Sbjct: 51  IYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHIFIYICICLY 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,555,425
Number of Sequences: 237096
Number of extensions: 1378305
Number of successful extensions: 2177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2175
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)