Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0592
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    31   0.67 
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        31   0.67 
AF288812-1|AAG10199.1|  566|Caenorhabditis elegans synembryn pro...    28   6.3  
AC084158-34|AAK68564.1|  566|Caenorhabditis elegans Resistance t...    28   6.3  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    27   8.3  

>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
            T04A8.14 protein.
          Length = 1521

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 529  DARLKRSKCRRKTIFGDELQRSDAHNNTHNVSY 431
            D  L +S+ ++KT     ++R  AH N HNVSY
Sbjct: 1276 DLELMKSESKKKTEANTRVKRVIAHPNFHNVSY 1308


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
            protein T04A8.14 protein.
          Length = 1521

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 529  DARLKRSKCRRKTIFGDELQRSDAHNNTHNVSY 431
            D  L +S+ ++KT     ++R  AH N HNVSY
Sbjct: 1276 DLELMKSESKKKTEANTRVKRVIAHPNFHNVSY 1308


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 529  DARLKRSKCRRKTIFGDELQRSDAHNNTHNVSY 431
            D  L +S+ ++KT     ++R  AH N HNVSY
Sbjct: 1276 DLELMKSESKKKTEANTRVKRVIAHPNFHNVSY 1308


>AF288812-1|AAG10199.1|  566|Caenorhabditis elegans synembryn
           protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -3

Query: 541 RLCPDARLKRSKCRRKTI---FGDELQRSDAHNNT--HNVSYIYLLPA 413
           RLC D++  R  CR + I     +E+Q+    NNT    ++ I +LP+
Sbjct: 370 RLCTDSKYVRRYCRIRVIPPLVSEEVQKRPEENNTLRGRIARIMMLPS 417


>AC084158-34|AAK68564.1|  566|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 8, isoform a
           protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -3

Query: 541 RLCPDARLKRSKCRRKTI---FGDELQRSDAHNNT--HNVSYIYLLPA 413
           RLC D++  R  CR + I     +E+Q+    NNT    ++ I +LP+
Sbjct: 370 RLCTDSKYVRRYCRIRVIPPLVSEEVQKRPEENNTLRGRIARIMMLPS 417


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 284  HCIFFLVCLFKYRYYLYVITVY 349
            HC+ ++VC + Y    +++T Y
Sbjct: 1501 HCLLYVVCPYNYEVIQFIVTSY 1522


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,872,631
Number of Sequences: 27780
Number of extensions: 240239
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)