Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0592
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47070.1 68415.m05881 squamosa promoter-binding protein-like ...    29   2.5  
At5g18636.1 68418.m02212 hypothetical protein                          27   7.7  

>At2g47070.1 68415.m05881 squamosa promoter-binding protein-like 1
           (SPL1) identical to squamosa promoter binding
           protein-like 1 [Arabidopsis thaliana] GI:5931655;
           contains Pfam profile PF03110: SBP domain
          Length = 881

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 436 SYIYLLPAKLNKHITEESHTYVN 368
           SYI+L+  K+NK  T E H  VN
Sbjct: 768 SYIHLIQRKINKKSTTEDHVVVN 790


>At5g18636.1 68418.m02212 hypothetical protein
          Length = 367

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 550 YNRRLCPDARLKRSKCRRKTIFGDELQRSDAHNNTHNVSYIYLLP 416
           +NR  CP  +   S  R + +F D +QRS  ++ +      + +P
Sbjct: 213 HNRAYCPYRQRSLSIARERALFCDSVQRSSMNSQSQMTESSFPVP 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,833,361
Number of Sequences: 28952
Number of extensions: 211839
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)