Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0591
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A9G2 Cluster: Putative uncharacterized protein; n=5; ...    38   0.23 
UniRef50_Q898Z2 Cluster: Putative uncharacterized protein; n=1; ...    38   0.31 
UniRef50_A0EBC9 Cluster: Chromosome undetermined scaffold_88, wh...    37   0.41 
UniRef50_Q93N53 Cluster: Glycosyl transferase; n=4; Coxiella bur...    34   2.9  
UniRef50_Q233L5 Cluster: Putative uncharacterized protein; n=2; ...    34   3.8  
UniRef50_A0BEW6 Cluster: Chromosome undetermined scaffold_103, w...    33   6.6  
UniRef50_UPI00004996E2 Cluster: melanocyte prolifeating gene 1; ...    33   8.8  
UniRef50_Q6GH07 Cluster: Protein msa; n=12; Staphylococcus aureu...    33   8.8  

>UniRef50_Q4A9G2 Cluster: Putative uncharacterized protein; n=5;
           Mycoplasma hyopneumoniae|Rep: Putative uncharacterized
           protein - Mycoplasma hyopneumoniae (strain J / ATCC
           25934 / NCTC 10110)
          Length = 1973

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 17/55 (30%), Positives = 33/55 (60%)
 Frame = +3

Query: 105 IVRRIFIEAYGYCFKFVLKTLVSKQSMHYSNSSIHFSQIFEFMIKNSCIEFSEIM 269
           +++R+  + Y    KF L   +S  S +Y+N S+ F+ +  F+I+NS   F++I+
Sbjct: 769 VLKRLLTKLYPLISKFKLSYFISTDSPNYNNFSVFFNSVKGFLIENSFQIFNKII 823


>UniRef50_Q898Z2 Cluster: Putative uncharacterized protein; n=1;
           Clostridium tetani|Rep: Putative uncharacterized protein
           - Clostridium tetani
          Length = 113

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 174 KQSMHYSNSSIHFSQIFEFMIKNSCIEFSEIMYILTIIECKNVSILYLYS-NTMQKTNIW 350
           +++M Y N  IH+ +I E +     I+ S+++ IL   ECK +  L L   N M   NI+
Sbjct: 11  RKNMSYFNKQIHYEKIIELLCNYKKIDRSKLIEILKDEECKYILFLLLNKYNCMDNENIY 70


>UniRef50_A0EBC9 Cluster: Chromosome undetermined scaffold_88, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_88, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2074

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 168  VSKQSMHY--SNSSIHFSQIFEFMIKNSCIEFSEIMYILTIIECKNVSILYLYSNTMQKT 341
            + K  MHY   N  I  + +F F      + F  +  +  ++     SI+Y+ SNT+  T
Sbjct: 1711 MDKNLMHYYQQNDLISSALLFNFDCSYCTLNFQNLTIVSNLVTNSTQSIIYIKSNTIIMT 1770

Query: 342  NIWFCIRKYTC 374
            NI F   KY C
Sbjct: 1771 NIVF---KYNC 1778


>UniRef50_Q93N53 Cluster: Glycosyl transferase; n=4; Coxiella
           burnetii|Rep: Glycosyl transferase - Coxiella burnetii
          Length = 279

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 6   GTRSYRKCYN*VSPVQGVYFVFFFWIN-LASTYYIVRRIFIEAYGYCFKFVLKTLVSKQS 182
           G  S  +  N V  V  + F F      L  +  + R ++     YC+ F+ + L S++ 
Sbjct: 122 GAHSAEELMNGVMAVSLLKFDFIIGSKYLYGSKVVGRALYRRFISYCYSFLARILFSRRL 181

Query: 183 MHYSNSSIHFSQIFEFMIKNSCIEFSEIMYILTII 287
             YSNS   +S     +I +    +S  +Y+L I+
Sbjct: 182 RDYSNSYRFYSYETAKLILSRKFSYSSPIYLLEIL 216


>UniRef50_Q233L5 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 918

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +3

Query: 141 CFKFVLKTLVSKQSMHYSNSSIHFSQIFEFMIKNSCIEFSEIMYILTIIECKNVSILYLY 320
           CF F++ TLV    + Y N  +   Q F +M K S I    I  IL   EC ++ +L  Y
Sbjct: 502 CFIFMIITLVLV-ILQYFNFQVKNEQAFNYMKKYSNI----IFVILFDFECNSIQLLKSY 556

Query: 321 SNTMQK 338
            N++++
Sbjct: 557 RNSLKR 562


>UniRef50_A0BEW6 Cluster: Chromosome undetermined scaffold_103,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_103,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 983

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 22/75 (29%), Positives = 42/75 (56%)
 Frame = -2

Query: 457 VIIFSYKCSKNITQLIY*MRNKQRLKVLQVYLRMQNQILVFCIVLL*RYKMDTFLHSMIV 278
           V I + KC K+I   +   RNKQ+L++  +Y ++ NQ+++F I  L +  +   +  +I+
Sbjct: 251 VKILTLKCYKHIIIRMLSSRNKQQLQIFPIYQQL-NQLILFLIQSL-QITISEEVTVIIL 308

Query: 277 NIYIISLNSIHEFLI 233
            I   ++N I  + I
Sbjct: 309 EILSTTINQIEFYNI 323


>UniRef50_UPI00004996E2 Cluster: melanocyte prolifeating gene 1;
           n=2; Entamoeba histolytica HM-1:IMSS|Rep: melanocyte
           prolifeating gene 1 - Entamoeba histolytica HM-1:IMSS
          Length = 318

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +3

Query: 105 IVRRIFIEAYGYCFKFVLKTLVSKQSMHYSNSSIHFSQIFEFMIKNSCIEFSEIMYILTI 284
           +V+  FIEA   C++ V + L S Q    +  S+H S   + ++    + + E + +L I
Sbjct: 168 LVQPEFIEAVLTCYQIVSQHLPSLQQCFETRYSVHPSG--KILVNTQAVPWKESLNLLEI 225

Query: 285 IE----CKNVSILYLYSNTMQKTNIWFC 356
           IE     K   +LY+    + +   W C
Sbjct: 226 IEESKTGKKCEVLYVLQPDLGRGTQWKC 253


>UniRef50_Q6GH07 Cluster: Protein msa; n=12; Staphylococcus
           aureus|Rep: Protein msa - Staphylococcus aureus (strain
           MRSA252)
          Length = 133

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +3

Query: 66  VFFFWINLASTYYIVRRIFIEAYGYCFKFVLKTLVSKQSMHYSNSSIHFSQIFEFMIKNS 245
           + FF  N+  TY     IFI+ Y Y +   L TL   +  +Y  + +   +  + +I + 
Sbjct: 44  IVFFKTNIDKTYIFFNIIFIDFYYYIYNVHLMTL--PKFNNYIKTEMMELEHIDVLITSK 101

Query: 246 CIEFSEIMYILTIIECKNVSILYLYSNTMQKT 341
              F EI++    +    + + YL      KT
Sbjct: 102 DFGFDEILFFTLYLLLILIVLYYLKKQLKNKT 133


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,747,154
Number of Sequences: 1657284
Number of extensions: 10457811
Number of successful extensions: 24975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24954
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)