Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0591
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   1.9  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   4.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   5.9  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = +3

Query: 180 SMHYSNSSIHFSQIFEFMIKN--SCIEFSEIMYILTIIEC 293
           S++ SNS++ FS IF+ + K+  S + FS + ++L ++ C
Sbjct: 540 SLNSSNSTVSFSGIFDRVEKSVISELNFSFLFFLLWLLIC 579


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +3

Query: 63  FVFFFWINLASTYYIVRRIFIEAYGYCFKFVLKTLVSKQSMHYSNSSIHFSQIF-EFMIK 239
           F F +WI  A   Y+ + +    Y Y    + K L S   +   N    F+ +F    I 
Sbjct: 109 FAFVYWITTAIVGYLFKIVRAPFYIYVLLILSKRLHSIFILRLFNDG--FNSLFSSLFIL 166

Query: 240 NSCIEFSEIMYILTIIEC--KNVSILYL 317
           +SC +      IL  + C  K  S+LY+
Sbjct: 167 SSCKKKWVRASILLSVACSVKMSSLLYV 194


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 77  LDQFGQYILYCTSNLY*SLW 136
           LD FG++I+ CTS+ +  +W
Sbjct: 121 LDAFGEWIIACTSSRHVYVW 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,804
Number of Sequences: 5004
Number of extensions: 51313
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)