Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0591
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41474| Best HMM Match : Ubie_methyltran (HMM E-Value=0.54)          30   2.0  
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)                 29   3.6  
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 28   8.3  

>SB_41474| Best HMM Match : Ubie_methyltran (HMM E-Value=0.54)
          Length = 271

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -1

Query: 431 EKHYTINLLNEKQTTLKSTTGIFANAKPNISFLHCVTIKI--*NGHVFAFYDSQYIHYF 261
           + HY  N        L+S   +F    P +  LHCV  KI   +  V     +Q  HYF
Sbjct: 70  DDHYITNTRVIASDPLESMCDLFKQLLPEVKMLHCVAEKIDLADESVDVVISAQAFHYF 128


>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
          Length = 481

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 291 CKNVSILYLYSNTMQK 338
           CKN+S+LYLY N + K
Sbjct: 50  CKNLSVLYLYDNNISK 65


>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 288 ECKNVSILYLYSNTMQKTNIWF--CIRKYTCSTFKRCLFLIQ*INCVMF 428
           +CKN      YS T    + W   CI    CS+ + CL   Q  NCV++
Sbjct: 43  QCKNDQSCGKYSYTYGGNDYWQNGCIDTKECSSSEMCLKDSQKDNCVVY 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,732
Number of Sequences: 59808
Number of extensions: 321882
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)