Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0591
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    29   4.2  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    28   5.5  

>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +3

Query: 57  VYFVFFFWINLASTYYIVRRIFIEAYGYCFKFVLKTLVSKQSMHYSNSSIHFSQIFEFMI 236
           +Y   F    +  TY ++  +F  A G+ F  V + +    +++Y+ + I FS I ++++
Sbjct: 26  IYITLFHSKRIYGTYKLMVVMF-SALGFLFS-VSEFIARPFTLNYNRAVILFS-INDWIL 82

Query: 237 KNSCIEFSE---IMYILTIIECKNVSILYLYSNTMQKTNIWF 353
             + +  +    I + L II    V  +Y Y      T +W+
Sbjct: 83  SKNFLSIALSFWITFYLLIISLVGVQFVYRYLYIFHSTKLWY 124


>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
 Frame = +3

Query: 162 TLVSKQSMHYSNSSIHFSQIFEFMIKNSCIEFSEIMYILTIIECKNVSILYLYSNTMQKT 341
           T VS +   Y +S++    I+ F+  N  I  +    +L I   K + +L     ++  T
Sbjct: 145 TYVSSKDNFYISSTLGHKAIYGFLAPNLFI-ITIFNTVLNIKAYKKLLVLKKTLRSVPDT 203

Query: 342 NIW------FCIRKYTC--STFKRCLFLIQ*INCVMFFEHLYE 446
           N++      F I  +    STFK  +FL++  N   FFE L +
Sbjct: 204 NLFYMSLAMFGIDSFLAVLSTFKAIIFLLELKNSSEFFERLVD 246


>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
 Frame = +3

Query: 48  VQGVYFVFFFWINLASTYYIVRRIFIEAYGYCFKFV--LKTLVSKQSMHY--SNSSIHFS 215
           +  + F FFFW+ L +  +      +  Y YC   +  +  +  +  M +   +  ++  
Sbjct: 35  IDTIQFSFFFWVMLCAKQFHFNFTILLGYIYCIHIMDNIANITMRLDMFFGIDDLKVYND 94

Query: 216 QIFEFMIKNSCIEFSEIMYILTIIECKNVSILYLYSNTMQKTNIWFCI 359
           +IF   +  S    +  M IL  +  +     Y   N  +K   +  I
Sbjct: 95  KIFTASMNVSIFTMASAMCILPCMIIERCFATYFVENYEKKPRKYISI 142


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 69  FFFWINLASTYYIVRRIFIEAYGYCFKFVLKTLVSKQSMHYSNSSIHFSQIFEFMIKNS 245
           FF W    S   I+  +FI A  Y   + LK   S++S H   +  + +Q F+ + ++S
Sbjct: 186 FFEW----SVLSIIFPLFINAVTYIRFYYLKKRTSRESQHRRKARENVAQFFQTVFQDS 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,359,993
Number of Sequences: 27780
Number of extensions: 279390
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)