Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0591
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00...    29   2.9  
At2g05350.1 68415.m00563 hypothetical protein                          29   3.9  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    28   6.8  
At2g26600.1 68415.m03191 glycosyl hydrolase family 17 protein          28   6.8  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    28   6.8  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    28   6.8  

>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 338

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 273 ILTIIECKNVSILYLYSNTMQKTNIWFCIRKYTCSTFKRCLFLIQ*INCVMFFEHLY 443
           +L+ +  + +S+LY +S    K  IW      T +T    L L    NCV  F  LY
Sbjct: 248 VLSFVREEQLSVLY-WSRATPKMEIWITNNIDTDATLLWRLHLDTRFNCVRIFSSLY 303


>At2g05350.1 68415.m00563 hypothetical protein
          Length = 453

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +1

Query: 13  DHIVSVIIESLPSKACTLFFFSGSIWPVHIILYVESLLKLMVIVSNS 153
           +H + V++E+     C ++ F     P+HI+   ESL++++ +  N+
Sbjct: 408 EHSLDVVLEA-KQDICRIYGFDPQSSPMHIVSQGESLIRMVFLSHNN 453


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 436 IYMKI*LPPYSYQ*TFVHQLNEKVKQRKENELK 534
           I MK  LPP ++   F+H++ ++ KQRKE   K
Sbjct: 593 IDMKESLPPDAFA-PFIHEIKKREKQRKERAWK 624


>At2g26600.1 68415.m03191 glycosyl hydrolase family 17 protein
          Length = 388

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 63  FVFFFWINLASTYYIVRRIFIEAYGYCFKFVLKTLVSKQSM 185
           F FFF+ NL S  Y V   F+  YG  +  +   + S + +
Sbjct: 11  FFFFFFFNLTSLEYQVDGAFVGTYGINYGRIADNIPSPEKV 51


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 171 SKQSMHYSNSSIHFSQIFEFMIKNSCIEFSEIMYIL 278
           S  ++ Y N  I   ++FE M+K+ C + +  + IL
Sbjct: 696 SSGTVQYQNKMIQSKELFESMVKHPCFKDTPFILIL 731


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 171 SKQSMHYSNSSIHFSQIFEFMIKNSCIEFSEIMYIL 278
           S  ++ Y N  I   ++FE M+K+ C + +  + IL
Sbjct: 696 SSGTVQYQNKMIQSKELFESMVKHPCFKDTPFILIL 731


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,768,500
Number of Sequences: 28952
Number of extensions: 227259
Number of successful extensions: 482
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)