Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0590
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24VK4 Cluster: Putative uncharacterized protein; n=1; ...    36   0.96 
UniRef50_UPI000155CA23 Cluster: PREDICTED: similar to THAP domai...    33   8.9  
UniRef50_A7P4D1 Cluster: Chromosome chr4 scaffold_6, whole genom...    33   8.9  

>UniRef50_Q24VK4 Cluster: Putative uncharacterized protein; n=1;
           Desulfitobacterium hafniense Y51|Rep: Putative
           uncharacterized protein - Desulfitobacterium hafniense
           (strain Y51)
          Length = 264

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +1

Query: 424 LIFTIVLRS--PIIIEDLLIHVSLLDDTVFYGITKNGRFLLYCAFEVSSLVCI 576
           LIF ++LR   P++ E   +  + LDD ++ G+   G +LLY A  ++ + C+
Sbjct: 120 LIFILLLRFSVPLVNEKGPMFQNALDDNLYGGLLSEGHYLLYFAVRIAMIFCV 172


>UniRef50_UPI000155CA23 Cluster: PREDICTED: similar to THAP domain
           containing 6; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to THAP domain containing 6 -
           Ornithorhynchus anatinus
          Length = 205

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -2

Query: 691 HRRFGPRHEKKRKKWVLAQKRL 626
           HRR  P  EK ++KWVLA KRL
Sbjct: 47  HRRPFPTDEKAKRKWVLAMKRL 68


>UniRef50_A7P4D1 Cluster: Chromosome chr4 scaffold_6, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr4 scaffold_6, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 124

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 312 IKQVYNKITERSRYAITIKWGYIHISYDKLLVGGWKLKDYKCSNDSLDRPSTA 154
           IK  +   T R  +     + YI+  Y ++L  G K+ +  CS+ SL RPSTA
Sbjct: 3   IKNYFKLYTMRDFFLNNFFFNYIYRHYRRIL-DGTKVMNGWCSSSSLSRPSTA 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,251,431
Number of Sequences: 1657284
Number of extensions: 11614881
Number of successful extensions: 26095
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26086
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)