Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0590
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    28   1.5  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   2.6  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   6.0  

>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 291 ITERSRYAITIKWGYIHISYDKLLVGGWKLKDYKCSNDSLDRPSTANCES 142
           +T   ++   +    +H S  K+L G W    Y    ++ D  ST NCES
Sbjct: 225 VTSLKKHTAPVSCLALHGSEKKVLSGSWDKMVYYWDLNTGDAISTYNCES 274


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 475 IHVSLLDDTVFYGITKNGRFLLYCAFEVSSLVC 573
           IH+S +   +  G+T N R +  C +   +LVC
Sbjct: 447 IHLSPMVSALLQGLTDNPRIVANCCWAFMNLVC 479


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 264 TIKWGYIHISYDKLLVGGWKLKDYKCSNDSLDRP 163
           T +W  +  ++DKLLV         C N+ L RP
Sbjct: 24  TAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRP 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,489
Number of Sequences: 5004
Number of extensions: 52607
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)