Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0590
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            31   1.2  
SB_20887| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 234 YDKLLVGGWKLKDYKCSNDSLDRPSTANC 148
           +D   +GG+K   Y+CSN++++R     C
Sbjct: 263 WDGTFIGGFKASPYRCSNNNVERQMHRKC 291


>SB_20887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 675 PGTKKKEKNGYSHKNVFCQF-KIRFTIKRRVILVNADKRTDFERAV 541
           P T+K  KNG+S K  +CQ  ++ F    +V +       D++  V
Sbjct: 139 PQTQKTMKNGFSAKRAWCQHRRVGFFCNFKVDIAQQSSGNDYDCGV 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,464,509
Number of Sequences: 59808
Number of extensions: 376491
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)