Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0590
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical ...    29   2.4  
AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm rece...    29   2.4  
U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical pr...    29   4.2  

>AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical
           protein K05F6.4 protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 442 LRSPIIIEDLLIHVSL-LDDTVFYGITKNGRFLLYC 546
           +R   I +DLL ++ L + D +FY I++NG  L  C
Sbjct: 107 IRQFCIFKDLLCNIGLFMGDALFYTISRNGNRLFSC 142


>AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 222 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 569 SAFTKITRLFIVNLILN*QKTFLCEYPFFSFFF 667
           +AF+ +T +F+++LILN   T +  Y F   +F
Sbjct: 19  AAFSILTNIFLIHLILNKSPTQIGAYKFLMLYF 51


>U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical
           protein F18F11.1 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 467 SSIIIGLRRTIVKIKIVNTFNFVVYVKTGSALWAV 363
           S I++GL +     KI+   NF V+   G+A+W +
Sbjct: 135 SRIVVGLTKLAANEKIIPQPNFPVFPLFGAAVWGI 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,306
Number of Sequences: 27780
Number of extensions: 294669
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)