Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0590
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    27   0.13 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.40 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.5  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 113 KLHNLKT-GGNWKFRNIKKRKTMWSHRVECTTR 18
           ++H ++T GGN K+R ++     +S   ECTTR
Sbjct: 42  RIHTVRTRGGNKKYRALRLDTGNFSWGSECTTR 74


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 538 LYCAFEVSSLVCIH*NNSPFYCKSDLELTKDVFVR 642
           +Y  ++   +V ++   SPF   +D EL KD+ +R
Sbjct: 63  IYEKYKNEPMVGLYATRSPFLLLNDPELIKDILIR 97


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 99  KNWG*LEISKYKKKKNNVVTPCGMYNED 16
           K W  +E    +   +N +T C M N D
Sbjct: 38  KGWKEVEYEVVRDAYDNCITVCNMENVD 65


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 663 KKEKNGYSHKNVF 625
           KKE + Y H+NVF
Sbjct: 275 KKEFSHYEHQNVF 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,393
Number of Sequences: 438
Number of extensions: 4076
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)